AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1215060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215060 MtrunA17_Chr4g0064131 93.301 209 13 1 1 209 1 208 2.06e-122 345
Msa1215060 MtrunA17_Chr3g0137601 31.963 219 125 8 1 207 1 207 6.50e-29 107
Msa1215060 MtrunA17_Chr1g0183251 30.952 168 63 5 93 207 83 250 4.98e-19 82.8
Msa1215060 MtrunA17_Chr7g0260621 28.834 163 91 4 59 207 44 195 1.69e-18 80.1
Msa1215060 MtrunA17_Chr1g0184791 28.922 204 106 7 34 208 35 228 4.24e-18 79.7
Msa1215060 MtrunA17_Chr1g0166011 29.932 147 75 4 69 207 50 176 7.87e-18 77.8
Msa1215060 MtrunA17_Chr1g0190711 31.646 158 76 6 78 207 82 235 1.28e-16 75.9
Msa1215060 MtrunA17_Chr1g0187961 26.506 166 88 5 62 207 21 172 1.28e-16 74.3
Msa1215060 MtrunA17_Chr5g0411501 27.673 159 82 3 76 207 165 317 1.56e-16 76.6
Msa1215060 MtrunA17_Chr1g0187921 26.380 163 96 3 67 207 58 218 2.59e-16 74.7
Msa1215060 MtrunA17_Chr2g0330951 28.662 157 69 4 93 207 97 252 4.53e-16 74.7
Msa1215060 MtrunA17_Chr6g0486121 31.944 144 66 4 90 207 99 236 4.63e-16 74.3
Msa1215060 MtrunA17_Chr8g0366881 28.125 160 88 3 71 206 173 329 5.63e-16 75.1
Msa1215060 MtrunA17_Chr1g0184801 26.543 162 93 3 60 207 46 195 7.46e-16 72.8
Msa1215060 MtrunA17_Chr7g0260641 29.927 137 72 3 93 208 100 233 1.73e-15 72.8
Msa1215060 MtrunA17_Chr4g0004181 33.884 121 57 3 93 206 55 159 1.82e-15 71.2
Msa1215060 MtrunA17_Chr8g0390281 30.935 139 68 2 93 207 141 275 3.67e-15 72.4
Msa1215060 MtrunA17_Chr5g0428141 30.657 137 69 6 93 207 197 329 3.75e-15 72.8
Msa1215060 MtrunA17_Chr4g0069561 32.000 125 64 4 91 207 70 181 6.92e-15 69.7
Msa1215060 MtrunA17_Chr7g0270851 38.043 92 48 2 124 206 64 155 1.76e-13 65.5
Msa1215060 MtrunA17_Chr1g0209181 31.967 122 68 4 93 206 54 168 3.27e-13 65.1
Msa1215060 MtrunA17_Chr1g0193861 32.500 120 59 4 96 206 64 170 3.64e-13 65.1
Msa1215060 MtrunA17_Chr2g0332141 32.990 97 48 2 130 209 8 104 2.56e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215060 AT4G32280.1 28.745 247 132 8 1 208 1 242 2.52e-26 102
Msa1215060 AT1G04550.2 35.616 146 61 4 93 205 70 215 1.21e-21 89.4
Msa1215060 AT4G32280.2 43.902 82 43 1 130 208 119 200 1.17e-20 86.3
Msa1215060 AT2G33310.3 31.169 154 62 4 93 207 76 224 6.45e-20 85.1
Msa1215060 AT2G33310.1 31.169 154 62 4 93 207 76 224 6.45e-20 85.1
Msa1215060 AT2G33310.2 31.169 154 62 4 93 207 77 225 6.98e-20 85.1
Msa1215060 AT5G25890.1 32.192 146 93 2 64 207 20 161 7.68e-20 83.2
Msa1215060 AT5G43700.1 29.927 137 78 3 79 207 49 175 2.12e-18 79.7
Msa1215060 AT4G28640.3 29.932 147 71 3 93 207 89 235 2.02e-17 78.2
Msa1215060 AT1G04240.1 31.655 139 77 3 78 207 50 179 2.16e-17 77.0
Msa1215060 AT4G28640.1 29.932 147 71 3 93 207 89 235 2.38e-17 78.2
Msa1215060 AT1G04240.2 31.655 139 77 3 78 207 150 279 3.15e-17 78.6
Msa1215060 AT4G28640.2 29.932 147 71 3 93 207 89 235 6.71e-17 77.8
Msa1215060 AT4G14550.1 30.147 136 72 2 93 207 77 210 8.73e-17 76.3
Msa1215060 AT4G14550.2 30.147 136 72 2 93 207 77 210 9.13e-17 76.3
Msa1215060 AT3G23030.1 26.994 163 84 5 61 207 21 164 1.79e-16 74.3
Msa1215060 AT3G23030.2 26.994 163 84 5 61 207 108 251 5.06e-16 74.7
Msa1215060 AT3G15540.1 33.884 121 63 2 93 206 71 181 5.19e-16 73.6
Msa1215060 AT3G17600.1 30.952 126 75 2 85 206 37 154 6.09e-16 72.4
Msa1215060 AT5G65670.1 30.657 137 69 3 93 206 184 317 6.35e-16 75.5
Msa1215060 AT5G65670.2 30.657 137 69 3 93 206 184 317 6.58e-16 75.5
Msa1215060 AT2G22670.5 32.374 139 67 5 93 207 166 301 2.61e-15 73.6
Msa1215060 AT2G22670.2 32.374 139 67 5 93 207 166 301 2.61e-15 73.6
Msa1215060 AT2G22670.3 32.374 139 67 5 93 207 166 301 2.67e-15 73.6
Msa1215060 AT2G22670.1 32.374 139 67 5 93 207 166 301 2.67e-15 73.6
Msa1215060 AT2G22670.4 32.374 139 67 5 93 207 183 318 3.55e-15 73.2
Msa1215060 AT1G15580.1 33.333 120 58 5 93 206 54 157 9.37e-15 69.3
Msa1215060 AT1G52830.1 31.667 120 61 4 94 206 72 177 2.11e-14 68.9
Msa1215060 AT3G23050.1 28.205 156 85 2 79 207 69 224 3.19e-14 69.7
Msa1215060 AT1G51950.1 27.746 173 87 3 72 207 77 248 3.45e-14 69.7
Msa1215060 AT3G16500.2 27.891 147 74 3 93 207 104 250 1.30e-13 68.2
Msa1215060 AT3G16500.1 27.891 147 74 3 93 207 104 250 1.30e-13 68.2
Msa1215060 AT4G29080.1 27.778 144 75 3 93 207 144 287 1.49e-13 68.6
Msa1215060 AT1G04250.1 27.737 137 69 3 93 207 83 211 2.82e-13 66.6
Msa1215060 AT3G62100.1 38.372 86 45 1 130 207 84 169 9.78e-13 64.3
Msa1215060 AT3G04730.1 24.837 153 72 4 93 207 71 218 1.02e-12 65.5
Msa1215060 AT4G32280.3 26.471 204 109 7 1 168 1 199 1.07e-12 64.7
Msa1215060 AT2G46990.1 37.209 86 46 1 130 207 86 171 2.27e-12 63.2
Msa1215060 AT4G14550.3 29.752 121 62 2 93 192 77 195 3.98e-12 63.2
Msa1215060 AT1G15050.2 37.647 85 46 1 129 206 61 145 8.12e-12 61.2
Msa1215060 AT4G14560.1 32.558 86 50 1 130 207 76 161 1.01e-11 61.2
Msa1215060 AT1G15050.1 37.647 85 46 1 129 206 93 177 1.61e-11 61.2

Find 65 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACCCATTGATTAATATT+TGG 0.091033 8_1:+76120469 None:intergenic
TTGCTTTGCTCACCTTTAAT+TGG 0.204563 8_1:-76120496 Msa1215060:three_prime_UTR
ATATTTGGGTTTCCAATTAA+AGG 0.209829 8_1:+76120484 None:intergenic
TCTCTTTGAATCATGATAAT+AGG 0.233271 8_1:-76122592 Msa1215060:CDS
TCTGAGTGGCCAGGAGTTAA+TGG 0.256229 8_1:+76122500 None:intergenic
ATACCCATTGATTAATATTT+GGG 0.271124 8_1:+76120470 None:intergenic
CAAACATGTCCATCAAAGTT+TGG 0.287284 8_1:+76122092 None:intergenic
TACTCTCAACCAAACTTTGA+TGG 0.301864 8_1:-76122101 Msa1215060:CDS
GAATTACGTGAAGGTGAAAA+TGG 0.315246 8_1:-76122176 Msa1215060:CDS
TCACAATATGGAGCTTCATT+TGG 0.317095 8_1:-76122678 Msa1215060:exon
CTCTCTACACAATCACAATA+TGG 0.343546 8_1:-76122690 Msa1215060:exon
GAGAGAAAGAGTGGGAAGGT+TGG 0.357245 8_1:+76122526 None:intergenic
TAGACCACCACCGAGAAATA+TGG 0.358386 8_1:+76120329 None:intergenic
CACAATATGGAGCTTCATTT+GGG 0.385933 8_1:-76122677 Msa1215060:exon
ATCAAGACAAAGAAGGTGAT+TGG 0.388129 8_1:-76121912 Msa1215060:CDS
TTCTTCCTCCTACAATTAAC+CGG 0.390508 8_1:+76122268 None:intergenic
CCCTGCTCTTAAGCAATTTG+AGG 0.399232 8_1:+76120582 None:intergenic
TTCTTGCTCAAGATATTTCA+TGG 0.399762 8_1:-76121888 Msa1215060:CDS
GATGGCCTCCGGTTAATTGT+AGG 0.427386 8_1:-76122276 Msa1215060:CDS
GATCACGTGGTCCCCATTGA+TGG 0.439591 8_1:-76122217 Msa1215060:CDS
GAAACCCAAATATTAATCAA+TGG 0.447820 8_1:-76120474 Msa1215060:three_prime_UTR
CTGAGTGGCCAGGAGTTAAT+GGG 0.451365 8_1:+76122501 None:intergenic
GATGATGAAGAAGCTCTTGT+TGG 0.454535 8_1:-76122298 Msa1215060:CDS
TAATGGGAGGAGAGAAAGAG+TGG 0.454609 8_1:+76122517 None:intergenic
TCTCTCCTCCCATTAACTCC+TGG 0.458165 8_1:-76122509 Msa1215060:CDS
CATAGCTATTTATTAATGAA+AGG 0.459720 8_1:+76122753 None:intergenic
AGAAAGAGTGGGAAGGTTGG+TGG 0.462033 8_1:+76122529 None:intergenic
GAACTTGAAGTCTTAAACGA+TGG 0.468843 8_1:+76120535 None:intergenic
GCCTCAAATTGCTTAAGAGC+AGG 0.470661 8_1:-76120583 Msa1215060:CDS
AAACCCAAATATTAATCAAT+GGG 0.473163 8_1:-76120473 Msa1215060:three_prime_UTR
ATAGCTATTTATTAATGAAA+GGG 0.475872 8_1:+76122754 None:intergenic
ATGGTTCTCATGATAATCAT+AGG 0.480012 8_1:-76122198 Msa1215060:CDS
ATTATCATGAGAACCATCAA+TGG 0.488136 8_1:+76122204 None:intergenic
AGCTCTTGTTGGATGGCCTC+CGG 0.493311 8_1:-76122287 Msa1215060:CDS
TTACTTGGTGATGGTGGTAG+TGG 0.498349 8_1:+76122439 None:intergenic
TGATCAACAACAGTATGAAC+TGG 0.501567 8_1:-76121938 Msa1215060:CDS
TTGTCCATATTTCTCGGTGG+TGG 0.504778 8_1:-76120333 Msa1215060:three_prime_UTR
TTATCATGAGAACCATCAAT+GGG 0.508335 8_1:+76122205 None:intergenic
TATTAATTACTTGGTGATGG+TGG 0.510150 8_1:+76122433 None:intergenic
AAATTAACGTAGTCAGAAGT+TGG 0.516653 8_1:+76120407 None:intergenic
TAATATTAATTACTTGGTGA+TGG 0.522964 8_1:+76122430 None:intergenic
CGGACGAGAATTATTATAAG+TGG 0.529450 8_1:+76122643 None:intergenic
CTGGTTTATCAAGACAAAGA+AGG 0.557412 8_1:-76121919 Msa1215060:CDS
GGTTGAGAGTATGAAATGAA+TGG 0.558722 8_1:+76122113 None:intergenic
TCATGATCATCTGAGTGGCC+AGG 0.559365 8_1:+76122491 None:intergenic
GGAGGAGAGAAAGAGTGGGA+AGG 0.576479 8_1:+76122522 None:intergenic
AATGGGAGGAGAGAAAGAGT+GGG 0.579242 8_1:+76122518 None:intergenic
ATGAAGAAGCTCTTGTTGGA+TGG 0.580018 8_1:-76122294 Msa1215060:CDS
CCTCAAATTGCTTAAGAGCA+GGG 0.580023 8_1:-76120582 Msa1215060:CDS
TATCATGATTCAAAGAGAAG+TGG 0.584987 8_1:+76122597 None:intergenic
TACGTGAAGGTGAAAATGGA+AGG 0.594315 8_1:-76122172 Msa1215060:CDS
CTCAAATTGCTTAAGAGCAG+GGG 0.598831 8_1:-76120581 Msa1215060:CDS
GGCCTCCGGTTAATTGTAGG+AGG 0.613414 8_1:-76122273 Msa1215060:CDS
AGGTGTAGGAATAGCTCGAA+AGG 0.621460 8_1:-76122152 Msa1215060:CDS
TTAGTAGCAGCAATATCGTA+CGG 0.636596 8_1:+76122623 None:intergenic
GTGAGCAAAGCAAACAACGT+TGG 0.654677 8_1:+76120506 None:intergenic
TTCCTCCTACAATTAACCGG+AGG 0.665193 8_1:+76122271 None:intergenic
AAGGTGAAAATGGAAGGTGT+AGG 0.668997 8_1:-76122166 Msa1215060:CDS
TGGTTGTCCATATTTCTCGG+TGG 0.670450 8_1:-76120336 Msa1215060:three_prime_UTR
TAATCATAGGAATTACGTGA+AGG 0.675805 8_1:-76122185 Msa1215060:CDS
AGTGGCCAGGAGTTAATGGG+AGG 0.697461 8_1:+76122504 None:intergenic
TTGCTCAAGATATTTCATGG+AGG 0.720826 8_1:-76121885 Msa1215060:intron
CATGATCATGATCATCTGAG+TGG 0.721603 8_1:+76122486 None:intergenic
AAATGATGTTGAAGATCACG+TGG 0.746908 8_1:-76122230 Msa1215060:CDS
TATCATGAGAACCATCAATG+GGG 0.763816 8_1:+76122206 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGATAAAAATAAATTTG+AGG + chr8_1:76120340-76120359 None:intergenic 10.0%
!! AACTAATAATATTAATTACT+TGG + chr8_1:76120780-76120799 None:intergenic 10.0%
!! GTACATTAATATTATTTATA+TGG - chr8_1:76120834-76120853 Msa1215060:intron 10.0%
!! TAGAGATTAAAAAAAATATA+AGG - chr8_1:76121547-76121566 Msa1215060:intron 10.0%
!!! ATAAGAAAAATATTCTTTTA+AGG - chr8_1:76121894-76121913 Msa1215060:CDS 10.0%
!! AATAAATGATGTATATAATT+TGG - chr8_1:76121924-76121943 Msa1215060:CDS 10.0%
!! GTATAAGAATATAAATTATA+TGG + chr8_1:76122122-76122141 None:intergenic 10.0%
!!! TTTTTTCTTATATTTGAAAT+CGG - chr8_1:76122407-76122426 Msa1215060:intron 10.0%
!! TTCACATATATTAAAAAAAT+TGG + chr8_1:76122455-76122474 None:intergenic 10.0%
!! ATAGCTATTTATTAATGAAA+GGG + chr8_1:76120450-76120469 None:intergenic 15.0%
!!! ATTAGTAGTACTAATTATTT+TGG + chr8_1:76121176-76121195 None:intergenic 15.0%
!! TTCAATGAATGTTTATAATT+AGG + chr8_1:76121383-76121402 None:intergenic 15.0%
!!! ATTTTTCTTATATTTGAGAA+GGG + chr8_1:76121885-76121904 None:intergenic 15.0%
!!! TATTTTTCTTATATTTGAGA+AGG + chr8_1:76121886-76121905 None:intergenic 15.0%
!! GAAAAAAAAATTCATTGTTT+AGG + chr8_1:76122394-76122413 None:intergenic 15.0%
!!! TTAATTTGTATCTAAAAAGT+TGG - chr8_1:76122762-76122781 Msa1215060:five_prime_UTR 15.0%
!! CATAGCTATTTATTAATGAA+AGG + chr8_1:76120451-76120470 None:intergenic 20.0%
!!! TAATATTAATTACTTGGTGA+TGG + chr8_1:76120774-76120793 None:intergenic 20.0%
!! AAGTACTAACATTGAAATAT+TGG + chr8_1:76120808-76120827 None:intergenic 20.0%
!! TTGAAAGATGACTTATAATT+AGG + chr8_1:76121426-76121445 None:intergenic 20.0%
!! AAAAAAAATATAAGGAGCAA+AGG - chr8_1:76121555-76121574 Msa1215060:intron 20.0%
!!! TTGGTTTTTTCTTTTTTGTT+TGG + chr8_1:76121595-76121614 None:intergenic 20.0%
!! AAAAAGAAAAAACCAACATT+AGG - chr8_1:76121599-76121618 Msa1215060:intron 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - chr8_1:76122241-76122260 Msa1215060:CDS 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - chr8_1:76122242-76122261 Msa1215060:CDS 20.0%
!! AAATGGAATGAAATAATCAT+TGG + chr8_1:76122290-76122309 None:intergenic 20.0%
!! TATATGTGAAATATGAAATC+AGG - chr8_1:76122465-76122484 Msa1215060:CDS 20.0%
!! ATATGTGAAATATGAAATCA+GGG - chr8_1:76122466-76122485 Msa1215060:CDS 20.0%
!! AAACCCAAATATTAATCAAT+GGG - chr8_1:76122728-76122747 Msa1215060:five_prime_UTR 20.0%
!!! ATACCCATTGATTAATATTT+GGG + chr8_1:76122734-76122753 None:intergenic 20.0%
!!! AATACCCATTGATTAATATT+TGG + chr8_1:76122735-76122754 None:intergenic 20.0%
!!! ATTAATCAATGGGTATTTTT+TGG - chr8_1:76122738-76122757 Msa1215060:five_prime_UTR 20.0%
!!! TTAATCAATGGGTATTTTTT+GGG - chr8_1:76122739-76122758 Msa1215060:five_prime_UTR 20.0%
!!! AGTAGTAGTTCAATATTTTT+TGG - chr8_1:76122845-76122864 Msa1215060:five_prime_UTR 20.0%
! TCTCTTTGAATCATGATAAT+AGG - chr8_1:76120609-76120628 Msa1215060:CDS 25.0%
! TTAGTACTACTAATTAGTTG+AGG - chr8_1:76121182-76121201 Msa1215060:intron 25.0%
! GTATATATAGTGTATATGCA+CGG - chr8_1:76121204-76121223 Msa1215060:intron 25.0%
! TGTTTATAATTAGGCATACA+AGG + chr8_1:76121374-76121393 None:intergenic 25.0%
! AGTTTGCATTAAAATGTGTT+AGG - chr8_1:76121495-76121514 Msa1215060:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG + chr8_1:76122184-76122203 None:intergenic 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG + chr8_1:76122185-76122204 None:intergenic 25.0%
! AAATATGAAATCAGGGTTTA+GGG - chr8_1:76122473-76122492 Msa1215060:CDS 25.0%
! CAAACTTTCTCTAACAATTA+AGG - chr8_1:76122518-76122537 Msa1215060:CDS 25.0%
! CTAAATAAAACTTGTGTGTT+TGG - chr8_1:76122566-76122585 Msa1215060:CDS 25.0%
!! ATATTTGGGTTTCCAATTAA+AGG + chr8_1:76122720-76122739 None:intergenic 25.0%
! GAAACCCAAATATTAATCAA+TGG - chr8_1:76122727-76122746 Msa1215060:five_prime_UTR 25.0%
TATCATGATTCAAAGAGAAG+TGG + chr8_1:76120607-76120626 None:intergenic 30.0%
!! TATTAATTACTTGGTGATGG+TGG + chr8_1:76120771-76120790 None:intergenic 30.0%
TTATCATGAGAACCATCAAT+GGG + chr8_1:76120999-76121018 None:intergenic 30.0%
ATTATCATGAGAACCATCAA+TGG + chr8_1:76121000-76121019 None:intergenic 30.0%
ATGGTTCTCATGATAATCAT+AGG - chr8_1:76121003-76121022 Msa1215060:intron 30.0%
TAATCATAGGAATTACGTGA+AGG - chr8_1:76121016-76121035 Msa1215060:intron 30.0%
TCATGTAGTTGGAAATTAAC+AGG - chr8_1:76121234-76121253 Msa1215060:intron 30.0%
TTCTTGCTCAAGATATTTCA+TGG - chr8_1:76121313-76121332 Msa1215060:intron 30.0%
TATCATTAATTAGTGCAAGC+TGG - chr8_1:76121343-76121362 Msa1215060:intron 30.0%
CATTAAAATGTGTTAGGAGT+TGG - chr8_1:76121501-76121520 Msa1215060:intron 30.0%
ACTTAACTAAGACCTAATGT+TGG + chr8_1:76121614-76121633 None:intergenic 30.0%
CATGTTAAGCAACCTAAAAA+GGG + chr8_1:76122072-76122091 None:intergenic 30.0%
ACATGTTAAGCAACCTAAAA+AGG + chr8_1:76122073-76122092 None:intergenic 30.0%
! AAGTGACACTCATTTTGTAA+CGG + chr8_1:76122150-76122169 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG + chr8_1:76122199-76122218 None:intergenic 30.0%
GAAATATGAAATCAGGGTTT+AGG - chr8_1:76122472-76122491 Msa1215060:CDS 30.0%
! AGGGTTTAGGGTTTATAATT+AGG - chr8_1:76122485-76122504 Msa1215060:CDS 30.0%
! GGGTTTAGGGTTTATAATTA+GGG - chr8_1:76122486-76122505 Msa1215060:CDS 30.0%
AAATTAACGTAGTCAGAAGT+TGG + chr8_1:76122797-76122816 None:intergenic 30.0%
!! TTTTGGTTGTCCATATTTCT+CGG - chr8_1:76122862-76122881 Msa1215060:five_prime_UTR 30.0%
CTCTCTACACAATCACAATA+TGG - chr8_1:76120511-76120530 Msa1215060:three_prime_UTR 35.0%
TCACAATATGGAGCTTCATT+TGG - chr8_1:76120523-76120542 Msa1215060:three_prime_UTR 35.0%
CACAATATGGAGCTTCATTT+GGG - chr8_1:76120524-76120543 Msa1215060:three_prime_UTR 35.0%
CGGACGAGAATTATTATAAG+TGG + chr8_1:76120561-76120580 None:intergenic 35.0%
TTAGTAGCAGCAATATCGTA+CGG + chr8_1:76120581-76120600 None:intergenic 35.0%
! ACGTAGTTTTTCTCAACTCT+TGG - chr8_1:76120634-76120653 Msa1215060:intron 35.0%
TTCTTCCTCCTACAATTAAC+CGG + chr8_1:76120936-76120955 None:intergenic 35.0%
AAATGATGTTGAAGATCACG+TGG - chr8_1:76120971-76120990 Msa1215060:intron 35.0%
TATCATGAGAACCATCAATG+GGG + chr8_1:76120998-76121017 None:intergenic 35.0%
GAATTACGTGAAGGTGAAAA+TGG - chr8_1:76121025-76121044 Msa1215060:intron 35.0%
! GGTTGAGAGTATGAAATGAA+TGG + chr8_1:76121091-76121110 None:intergenic 35.0%
TACTCTCAACCAAACTTTGA+TGG - chr8_1:76121100-76121119 Msa1215060:intron 35.0%
CAAACATGTCCATCAAAGTT+TGG + chr8_1:76121112-76121131 None:intergenic 35.0%
ACGGCATTAATTCATGTAGT+TGG - chr8_1:76121223-76121242 Msa1215060:intron 35.0%
TGATCAACAACAGTATGAAC+TGG - chr8_1:76121263-76121282 Msa1215060:intron 35.0%
CTGGTTTATCAAGACAAAGA+AGG - chr8_1:76121282-76121301 Msa1215060:intron 35.0%
ATCAAGACAAAGAAGGTGAT+TGG - chr8_1:76121289-76121308 Msa1215060:intron 35.0%
TTGCTCAAGATATTTCATGG+AGG - chr8_1:76121316-76121335 Msa1215060:intron 35.0%
AAAATGTGTTAGGAGTTGGA+AGG - chr8_1:76121505-76121524 Msa1215060:intron 35.0%
AAATATAAGGAGCAAAGGTG+TGG - chr8_1:76121560-76121579 Msa1215060:intron 35.0%
! ACAACAACCTCTTCTTTTCT+GGG + chr8_1:76121700-76121719 None:intergenic 35.0%
AAAAGAAGAGGTTGTTGTCA+TGG - chr8_1:76121702-76121721 Msa1215060:intron 35.0%
AGTGAAAGTCTATGTGAACT+AGG - chr8_1:76121740-76121759 Msa1215060:intron 35.0%
!!! CTAGGCATGGTAAGTTTTTT+TGG - chr8_1:76121758-76121777 Msa1215060:intron 35.0%
!! AATGTTAATTTGTGCCCTCA+AGG - chr8_1:76121949-76121968 Msa1215060:intron 35.0%
!! ATGTTAATTTGTGCCCTCAA+GGG - chr8_1:76121950-76121969 Msa1215060:intron 35.0%
! AATGCAAAGTTGCCCTTTTT+AGG - chr8_1:76122057-76122076 Msa1215060:intron 35.0%
!! CATGTTAACTTGTGTCCTAA+GGG + chr8_1:76122097-76122116 None:intergenic 35.0%
!! TCATGTTAACTTGTGTCCTA+AGG + chr8_1:76122098-76122117 None:intergenic 35.0%
TTGGCACACAGATTAAGAAA+TGG + chr8_1:76122307-76122326 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr8_1:76122333-76122352 Msa1215060:intron 35.0%
GAACTTGAAGTCTTAAACGA+TGG + chr8_1:76122669-76122688 None:intergenic 35.0%
TTGCTTTGCTCACCTTTAAT+TGG - chr8_1:76122705-76122724 Msa1215060:five_prime_UTR 35.0%
CATGATCATGATCATCTGAG+TGG + chr8_1:76120718-76120737 None:intergenic 40.0%
GATGATGAAGAAGCTCTTGT+TGG - chr8_1:76120903-76120922 Msa1215060:intron 40.0%
ATGAAGAAGCTCTTGTTGGA+TGG - chr8_1:76120907-76120926 Msa1215060:intron 40.0%
TACGTGAAGGTGAAAATGGA+AGG - chr8_1:76121029-76121048 Msa1215060:intron 40.0%
! AAGGTGAAAATGGAAGGTGT+AGG - chr8_1:76121035-76121054 Msa1215060:intron 40.0%
AATGAAGCCCAGAAAAGAAG+AGG - chr8_1:76121690-76121709 Msa1215060:intron 40.0%
! GACAACAACCTCTTCTTTTC+TGG + chr8_1:76121701-76121720 None:intergenic 40.0%
AAGTCTATGTGAACTAGGCA+TGG - chr8_1:76121745-76121764 Msa1215060:intron 40.0%
!! GACACTCATTTTGTAACGGA+AGG + chr8_1:76122146-76122165 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr8_1:76122337-76122356 Msa1215060:intron 40.0%
CCTCAAATTGCTTAAGAGCA+GGG - chr8_1:76122619-76122638 Msa1215060:CDS 40.0%
CTCAAATTGCTTAAGAGCAG+GGG - chr8_1:76122620-76122639 Msa1215060:CDS 40.0%
AATGGGAGGAGAGAAAGAGT+GGG + chr8_1:76120686-76120705 None:intergenic 45.0%
TAATGGGAGGAGAGAAAGAG+TGG + chr8_1:76120687-76120706 None:intergenic 45.0%
!! TTACTTGGTGATGGTGGTAG+TGG + chr8_1:76120765-76120784 None:intergenic 45.0%
TTCCTCCTACAATTAACCGG+AGG + chr8_1:76120933-76120952 None:intergenic 45.0%
AGGTGTAGGAATAGCTCGAA+AGG - chr8_1:76121049-76121068 Msa1215060:intron 45.0%
TGTGTTAGGAGTTGGAAGGA+TGG - chr8_1:76121509-76121528 Msa1215060:intron 45.0%
GTGTTAGGAGTTGGAAGGAT+GGG - chr8_1:76121510-76121529 Msa1215060:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG + chr8_1:76121966-76121985 None:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG + chr8_1:76121967-76121986 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG - chr8_1:76122079-76122098 Msa1215060:intron 45.0%
!! ATGAGTGTCGCTTTACGCTT+TGG + chr8_1:76122326-76122345 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr8_1:76122336-76122355 Msa1215060:intron 45.0%
GCCTCAAATTGCTTAAGAGC+AGG - chr8_1:76122618-76122637 Msa1215060:CDS 45.0%
CCCTGCTCTTAAGCAATTTG+AGG + chr8_1:76122622-76122641 None:intergenic 45.0%
GTGAGCAAAGCAAACAACGT+TGG + chr8_1:76122698-76122717 None:intergenic 45.0%
TGGTTGTCCATATTTCTCGG+TGG - chr8_1:76122865-76122884 Msa1215060:five_prime_UTR 45.0%
TTGTCCATATTTCTCGGTGG+TGG - chr8_1:76122868-76122887 Msa1215060:five_prime_UTR 45.0%
TAGACCACCACCGAGAAATA+TGG + chr8_1:76122875-76122894 None:intergenic 45.0%
!! TTAATTTATTTGATTAATTT+AGG - chr8_1:76120871-76120890 Msa1215060:intron 5.0%
!! TATAAGAATATAAATTATAT+GGG + chr8_1:76122121-76122140 None:intergenic 5.0%
AGAAAGAGTGGGAAGGTTGG+TGG + chr8_1:76120675-76120694 None:intergenic 50.0%
GAGAGAAAGAGTGGGAAGGT+TGG + chr8_1:76120678-76120697 None:intergenic 50.0%
TCTCTCCTCCCATTAACTCC+TGG - chr8_1:76120692-76120711 Msa1215060:intron 50.0%
CTGAGTGGCCAGGAGTTAAT+GGG + chr8_1:76120703-76120722 None:intergenic 50.0%
TCTGAGTGGCCAGGAGTTAA+TGG + chr8_1:76120704-76120723 None:intergenic 50.0%
TCATGATCATCTGAGTGGCC+AGG + chr8_1:76120713-76120732 None:intergenic 50.0%
GATGGCCTCCGGTTAATTGT+AGG - chr8_1:76120925-76120944 Msa1215060:intron 50.0%
GGAGGAGAGAAAGAGTGGGA+AGG + chr8_1:76120682-76120701 None:intergenic 55.0%
AGTGGCCAGGAGTTAATGGG+AGG + chr8_1:76120700-76120719 None:intergenic 55.0%
AGCTCTTGTTGGATGGCCTC+CGG - chr8_1:76120914-76120933 Msa1215060:intron 55.0%
GGCCTCCGGTTAATTGTAGG+AGG - chr8_1:76120928-76120947 Msa1215060:intron 55.0%
GATCACGTGGTCCCCATTGA+TGG - chr8_1:76120984-76121003 Msa1215060:intron 55.0%
! GCCCTCAAGGGCACATGTTA+AGG - chr8_1:76121962-76121981 Msa1215060:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 76120328 76122895 76120328 ID=Msa1215060;Name=Msa1215060
chr8_1 mRNA 76120328 76122895 76120328 ID=Msa1215060-mRNA-1;Parent=Msa1215060;Name=Msa1215060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=202|1|1|1|1|1|4|249|209
chr8_1 exon 76120328 76120628 76120328 ID=Msa1215060-mRNA-1:exon:26194;Parent=Msa1215060-mRNA-1
chr8_1 exon 76121886 76121967 76121886 ID=Msa1215060-mRNA-1:exon:26193;Parent=Msa1215060-mRNA-1
chr8_1 exon 76122086 76122330 76122086 ID=Msa1215060-mRNA-1:exon:26192;Parent=Msa1215060-mRNA-1
chr8_1 exon 76122443 76122895 76122443 ID=Msa1215060-mRNA-1:exon:26191;Parent=Msa1215060-mRNA-1
chr8_1 five_prime_UTR 76122694 76122895 76122694 ID=Msa1215060-mRNA-1:five_prime_utr;Parent=Msa1215060-mRNA-1
chr8_1 CDS 76122443 76122693 76122443 ID=Msa1215060-mRNA-1:cds;Parent=Msa1215060-mRNA-1
chr8_1 CDS 76122086 76122330 76122086 ID=Msa1215060-mRNA-1:cds;Parent=Msa1215060-mRNA-1
chr8_1 CDS 76121886 76121967 76121886 ID=Msa1215060-mRNA-1:cds;Parent=Msa1215060-mRNA-1
chr8_1 CDS 76120577 76120628 76120577 ID=Msa1215060-mRNA-1:cds;Parent=Msa1215060-mRNA-1
chr8_1 three_prime_UTR 76120328 76120576 76120328 ID=Msa1215060-mRNA-1:three_prime_utr;Parent=Msa1215060-mRNA-1
Gene Sequence

>Msa1215060

ATGGAGCTTCATTTGGGTCTTGCTCTCTCCACTTATAATAATTCTCGTCCGTACGATATTGCTGCTACTAATAGCCACTTCTCTTTGAATCATGATAATAGGAAACGTAGTTTTTCTCAACTCTTGGAGCATGCAGCAGAAACCACCAACCTTCCCACTCTTTCTCTCCTCCCATTAACTCCTGGCCACTCAGATGATCATGATCATGATGATCAACACTGCTCTCACAGCTCCACTACCACCATCACCAAGAGCAATGAAGATGATGAAGAAGCTCTTGTTGGATGGCCTCCGGTTAATTGTAGGAGGAAGAAAATTCGTTCTAATGAAAATGATGTTGAAGATCACGTGGTCCCCATTGATGGTTCTCATGATAATCATAGGAATTACGTGAAGGTGAAAATGGAAGGTGTAGGAATAGCTCGAAAGGTTAATCTTAGCATGCACCATTCATTTCATACTCTCAACCAAACTTTGATGGACATGTTTGAAAAATGTGATCATGATCAACAACAGTATGAACTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGAAGTTTCATTGAATGTGCGCAACGCCTCAAATTGCTTAAGAGCAGGGGATAG

Protein sequence

>Msa1215060

MELHLGLALSTYNNSRPYDIAATNSHFSLNHDNRKRSFSQLLEHAAETTNLPTLSLLPLTPGHSDDHDHDDQHCSHSSTTTITKSNEDDEEALVGWPPVNCRRKKIRSNENDVEDHVVPIDGSHDNHRNYVKVKMEGVGIARKVNLSMHHSFHTLNQTLMDMFEKCDHDQQQYELVYQDKEGDWLLAQDISWRSFIECAQRLKLLKSRG*